Linear mixed-effects models using S4 classes


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A B C D E F G H I L M N O P Q R S T U V W misc

$,groupedData-method Class "groupedData"
$<-,groupedData-method Class "groupedData"

-- A --

Alfalfa Split-Plot Experiment on Varieties of Alfalfa
anova,lme-method Class "lme"
Assay Bioassay on Cell Culture Plate

-- B --

bdf Language scores
BIC Bayesian Information Criterion
BIC,logLik-method Bayesian Information Criterion
BodyWeight Rat weight over time for different diets

-- C --

Cefamandole Pharmacokinetics of Cefamandole
Chem97 Scores on A-level Chemistry in 1997
coef,GLMM-method Class "GLMM"
coef,lme-method Class "lme"
coef,lmList-method Class "lmList"
coerce,groupedData,data.frame Coercion methods and assignments
coerce,groupedData,data.frame-method Class "groupedData"
coerce,lme,reStruct-method Coercion methods and assignments
coerce,matrix,pdmatrix-method Coercion methods and assignments
coerce,pdCompSymm,pdmatrix-method Coercion methods and assignments
coerce,pdDiag,pdmatrix-method Coercion methods and assignments
coerce,pdfactor,pdmatrix-method Coercion methods and assignments
coerce,pdIdent,corrmatrix-method Coercion methods and assignments
coerce,pdIdent,pdmatrix-method Coercion methods and assignments
coerce,pdLogChol,pdmatrix-method Coercion methods and assignments
coerce,pdMat,corrmatrix-method Coercion methods and assignments
coerce,pdMat,matrix-method Coercion methods and assignments
coerce,pdmatrix,corrmatrix-method Coercion methods and assignments
coerce,pdmatrix,pdfactor-method Coercion methods and assignments
coerce,pdNatural,corrmatrix-method Coercion methods and assignments
coerce,pdNatural,pdmatrix-method Coercion methods and assignments
coerce-methods Coercion methods and assignments
coerce<-,lme,reStruct-method Coercion methods and assignments
coerce<-,pdDiag,pdmatrix-method Coercion methods and assignments
coerce<-,pdIdent,pdmatrix-method Coercion methods and assignments
coerce<-,pdLogChol,pdmatrix-method Coercion methods and assignments
coerce<-,pdMat,matrix-method Coercion methods and assignments
coerce<-,pdMat,pdfactor-method Coercion methods and assignments
coerce<-,pdmatrix,pdfactor-method Coercion methods and assignments
coerce<-,pdNatural,corrmatrix-method Coercion methods and assignments
coerce<-,pdNatural,pdmatrix-method Coercion methods and assignments
Contraception Contraceptive use in Bangladesh
convertFromS3groupedData Creation of groupedData objects

-- D --

deviance,GLMM-method Class "GLMM"
deviance,lme-method Class "lme"
deviance,ssclme-method Class "lme"
Dialyzer High-Flux Hemodialyzer

-- E --

Earthquake Earthquake Intensity
egsingle US Sustaining Effects study
ergoStool Ergometrics experiment with stool types
Exam Exam scores from inner London

-- F --

Fatigue Cracks caused by metal fatigue
fitted,lme-method Class "lme"
fixed.effects Extract Fixed Effects
fixef Extract Fixed Effects
fixef,ANY-method Extract Fixed Effects
fixef,GLMM-method Class "GLMM"
fixef,lme-method Extract Fixed Effects
fixef,ssclme-method Extract Fixed Effects
formula,groupedData-method Class "groupedData"
formula,lme-method Class "lme"
formula,lmList-method Class "lmList"

-- G --

Gasoline Refinery yield of gasoline
Gcsemv GCSE exam score
getCovariate Utilities for formulas
getCovariateFormula Utilities for formulas
getGroups Utilities for formulas
getGroups,data.frame,formula-method Utilities for formulas
getGroups,groupedData-method Utilities for formulas
getGroupsFormula Utilities for formulas
getGroupsFormula,ANY-method Utilities for formulas
getResponse Utilities for formulas
getResponseFormula Utilities for formulas
GLMM Fit Generalized Linear Mixed Models via PQL
GLMM,ANY,ANY,ANY,formula-method Fit Generalized Linear Mixed Models via PQL
GLMM,formula,ANY,ANY,list-method Fit Generalized Linear Mixed Models via PQL
GLMM,formula,ANY,groupedData,list-method Fit Generalized Linear Mixed Models via PQL
GLMM,formula,ANY,groupedData,missing-method Fit Generalized Linear Mixed Models via PQL
GLMM,missing,ANY,ANY,ANY-method Fit Generalized Linear Mixed Models via PQL
GLMM-class Class "GLMM"
Glucose Glucose levels over time
Glucose2 Glucose Levels Following Alcohol Ingestion
groupedData Creation of groupedData objects
groupedData-class Class "groupedData"
guImmun Immunization in Guatemala
Gun Methods for firing naval guns
guPrenat Prenatal care in Guatemala

-- H --

Hsb82 High School and Beyond - 1982

-- I --

IGF Radioimmunoassay of IGF-I Protein
intervals Confidence Intervals on Coefficients
intervals,lmList-method Class "lmList"

-- L --

lme Fit linear mixed-effects models
lme,ANY,ANY,formula-method Fit linear mixed-effects models
lme,formula,ANY,formula-method Fit linear mixed-effects models
lme,formula,ANY,list-method Fit linear mixed-effects models
lme,formula,data.frame,list-method Fit linear mixed-effects models
lme,formula,groupedData,list-method Fit linear mixed-effects models
lme,formula,groupedData,missing-method Fit linear mixed-effects models
lme,missing,ANY,ANY-method Fit linear mixed-effects models
lme,missing,groupedData,ANY-method Fit linear mixed-effects models
lme-class Class "lme"
lmeControl Control values for lme
LMEoptimize<-,glmm,list-method Optimize linear mixed-effects
LMEoptimize<-,reStruct,list-method Optimize linear mixed-effects
lmList List of lm Objects with a Common Model
lmList,formula,data.frame-method List of lm Objects with a Common Model
lmList,formula,groupedData-method Class "groupedData"
lmList,missing,groupedData-method Class "groupedData"
lmList-class Class "lmList"
logLik,GLMM-method Class "GLMM"
logLik,lme-method Class "lme"

-- M --

Machines Productivity Scores for Machines and Workers
MathAchieve Mathematics achievement scores
MathAchSchool School demographic data for MathAchieve
Meat Tenderness of meat
Milk Protein content of cows' milk
Mmmec Malignant melanoma deaths in Europe
Muscle Contraction of heart muscle sections

-- N --

Names Extract or assign Names
Names,ANY-method Extract or assign Names
Names-methods Extract or assign Names
Names<-,ANY-method Extract or assign Names
Names<--methods Extract or assign Names
Nitrendipene Assay of nitrendipene

-- O --

Oats Split-plot Experiment on Varieties of Oats
Orthodont Growth curve data on an orthdontic measurement
Ovary Counts of Ovarian Follicles
Oxboys Heights of Boys in Oxford
Oxide Variability in Semiconductor Manufacturing

-- P --

PBG Effect of Phenylbiguanide on Blood Pressure
Phenobarb Phenobarbitol Kinetics
Pixel X-ray pixel intensities over time
plot,groupedData,missing-method Class "groupedData"
plot,lme-method Class "lme"
plot,lmList-method Class "lmList"
pooledSD Extract pooled standard deviation
pooledSD,lmList-method Class "lmList"

-- Q --

Quinidine Quinidine Kinetics

-- R --

Rail Evaluation of Stress in Railway Rails
random.effects Extract Random Effects
ranef Extract Random Effects
ranef,ANY-method Extract Random Effects
ranef,GLMM-method Class "GLMM"
ranef,lme-method Class "lme"
ranef,reStruct-method Extract Random Effects
ranef,ssclme-method Class "lme"
ranef-methods Extract Random Effects
RatPupWeight The weight of rat pups
Relaxin Assay for Relaxin
Remifentanil Pharmacokinetics of remifentanil
residuals,lme-method Class "lme"

-- S --

s3bbx Covariates in the Rodriguez and Goldman simulation
s3bby Responses simulated by Rodriguez and Goldman
show,GLMM-method Class "GLMM"
show,groupedData-method Class "groupedData"
show,lme-method Class "lme"
show,lmList-method Class "lmList"
show,ssclme-method Class "lme"
show,summary.GLMM-method Class "summary.GLMM"
show,summary.lme-method Class "summary.lme"
show,summary.ssclme-method Class "summary.lme"
show,VarCorr-method Class "VarCorr"
Socatt Social Attitudes Survey
solve,pdBlocked,missing-method Methods for Function solve
solve,pdDiag,missing-method Methods for Function solve
solve,pdIdent,missing-method Methods for Function solve
solve,pdLogChol,missing-method Methods for Function solve
solve,pdMat,missing-method Methods for Function solve
solve,pdNatural,missing-method Methods for Function solve
solve-methods Methods for Function solve
Soybean Growth of soybean plants
splitFormula Utilities for formulas
Spruce Growth of Spruce Trees
subFormula Utilities for formulas
summary,GLMM-method Class "GLMM"
summary,groupedData-method Class "groupedData"
summary,lme-method Class "lme"
summary,ssclme-method Class "lme"
summary.GLMM-class Class "summary.GLMM"
summary.lme-class Class "summary.lme"
summary.ssclme-class Class "summary.lme"

-- T --

Tetracycline1 Pharmacokinetics of tetracycline
Tetracycline2 Pharmacokinetics of tetracycline

-- U --

update,lme-method Class "lme"
update,lmList-method Class "lmList"

-- V --

VarCorr Extract variance and correlation components
VarCorr,lme-method Class "lme"
VarCorr,ssclme-method Class "lme"
VarCorr-class Class "VarCorr"
vcov,lme-method Class "lme"
vcov,ssclme-method Class "lme"

-- W --

Wafer Modeling of Analog MOS Circuits
Wheat Yields by growing conditions
Wheat2 Wheat Yield Trials

-- misc --

[,groupedData,ANY,ANY,logical-method Class "groupedData"
[,groupedData,ANY,ANY,missing-method Class "groupedData"
[,groupedData,ANY,missing,logical-method Class "groupedData"
[,groupedData,ANY,missing,missing-method Class "groupedData"
[,groupedData,missing,ANY,logical-method Class "groupedData"
[,groupedData,missing,ANY,missing-method Class "groupedData"
[<-,groupedData,ANY,ANY-method Class "groupedData"
[<-,groupedData,ANY,missing-method Class "groupedData"
[<-,groupedData,missing-method Class "groupedData"
[[,groupedData,ANY,ANY-method Class "groupedData"
[[,groupedData,ANY,missing-method Class "groupedData"